Type in a command, or "ls dictionary" to search all commands for "dictionary", etc.

Command List (ls)


pdb
Searches the PDB (Protein Databank at http://www.pdb.org) by accession code. Brings you to the protein structure summary page. For example, to find the structure of Arabidopsis Tom20 by it's PDB accession code, use: pdb 1ZU2
1915 uses - Created 2008-01-10 04:04:23 - Last used 2019-08-02 03:56:19 - Nominate - Description - http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=%s

uniprot
Uniprot protein knowledgebase keyword search.
1302 uses - Created 2008-08-26 07:11:58 - Last used 2019-06-17 03:53:29 - Nominate - Description - http://www.uniprot.org/uniprot/?query=%s&sort=score

kegg
KEGG Search. Kegg is a great biological resource. To find entries connected with glycolysis in KEGG kegg glycolysis To find entries with given protein knowing id kegg y1313 To find entries for gene with given id kegg glk
279 uses - Created 2009-10-16 08:24:09 - Last used 2016-05-16 12:22:25 - Nominate - Description - http://www.genome.jp/dbget-bin/www_bfind_sub?mode=bfind&max_hit=1000&dbkey=kegg&keywords=%s

plantcyc
NAME PlantCyc - search the plant metabolism database maintained by the Plant Metabolic Network (PMN) PlantCyc is a very useful database containing pathways and their catalytic enzymes and genes, as well as compounds from many plant species. Extracted from the plant literature, either supported by experimental evidence or based on expert hypotheses. Both experimentally-verified and computationally-predicted enzymes and genes are assigned to pathways. Evidence codes are attached to pathways and t…
118 uses - Created 2013-04-11 14:38:54 - Last used 2018-09-12 14:36:02 - Nominate - Description - http://pmn.plantcyc.org{ifThen -value1 %s -value2 -test NOTEQUAL -then /PLANT/substring-search?type=NIL&object=%s}

ihop
Searches the iHOP (Information Hyperlinked over Proteins) service, which uses gene networks to help navigate the biomedical literature.
103 uses - Created 2008-11-11 06:21:47 - Last used 2019-02-12 06:33:56 - Nominate - Description - http://www.ihop-net.org/UniPub/iHOP/?search=%s

genome
UCSC Genome Browser, Human Genome, March 2006 (hg18) assembly Can search by Gene names, symbols, chromosome number or region, keywords, database ID's (NP, NM, OMIM, etc.) Examples: chr7 Displays all of chromosome 7 20p13 Displays region for band p13 on chr 20 chr3:1-1000000 Displays first million bases of chr 3, counting from p arm telomere chr3:1000000+2000 Displays a region of chr3 that spans 2000 bases, starting with position 1000000 D16S3046 Displays region around STS marker D16S3046 from t…
73 uses - Created 2007-08-14 19:36:52 - Last used 2016-08-19 00:55:42 - Nominate - Description - http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=96205306&clade=vertebrate&org=Human&db=hg18&position=%s&pix=620&hgsid=96205306&hgt.dummyEnterButton.x=0&hgt.dummyEnterButton.y=0

protein
Protein OS The system from which we operate
51 uses - Created 2006-04-21 17:02:15 - Last used 2019-07-11 01:45:54 - Nominate - Description - http://www.proteinos.com

pfam
query the Sanger center protein family database for a specific protein family. Protein families start with PF to find a protein just type protein family Example:pfam PF02574
44 uses - Created 2007-12-06 19:40:51 - Last used 2015-01-27 07:15:33 - Nominate - Description - http://pfam.sanger.ac.uk/family?acc=%s

prosite
Searching PROSITE database. Intended to use for finding descriptions of functional protein motifs.
14 uses - Created 2008-10-01 13:55:07 - Last used 2013-10-03 05:52:07 - Nominate - Description - http://expasy.org/cgi-bin/prosite-search-ful?SEARCH=%s

PROTEINBROKERSLLCaColoradoWomenOwnedCompanyhasbeenNAMEDMASTERBROKER
1888 Press Release - Temptee Specialty Foods has developed a UNIQUE COOKING AND PASTEURIZATION PROCESS to help retain the moisture in PRE-COOKED SCRAMBLED EGGS WITHOUT ADDING FILLERS OR OTHER ADDITIVES. Temptee only adds a small amount of citric acid to the Hickman's Family Farms Cage Free Eggs to make a delicious scrambled egg product that can be served HOT or Cold.
0 uses - Created 2018-07-25 02:04:54 - Last used 2018-07-25 02:04:54 - Nominate - Description - http://www.theproteinbrokers.com