genome

http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=96205306&clade=vertebrate&org=Human&db=hg18&position=%s&pix=620&hgsid=96205306&hgt.dummyEnterButton.x=0&hgt.dummyEnterButton.y=0

UCSC Genome Browser, Human Genome, March 2006 (hg18) assembly

Can search by Gene names, symbols, chromosome number or region, keywords, database ID's (NP, NM, OMIM, etc.)

Examples:

chr7		Displays all of chromosome 7
20p13		Displays region for band p13 on chr 20
chr3:1-1000000		Displays first million bases of chr 3, counting from p arm telomere
chr3:1000000+2000		Displays a region of chr3 that spans 2000 bases, starting with position 1000000 


D16S3046		Displays region around STS marker D16S3046 from the Genethon/Marshfield maps. Includes 100,000 bases on each side as well.
RH18061;RH80175		Displays region between STS markers RH18061;RH80175. This syntax may also be used for other range queries, such as between cytobands and uniquely-determined ESTs, mRNAs, refSeqs, etc.


AA205474		Displays region of EST with GenBank accession AA205474 in BRCA1 cancer gene on chr 17
AC008101		Displays region of clone with GenBank accession AC008101
AF083811		Displays region of mRNA with GenBank accession number AF083811
PRNP		Displays region of genome with HUGO Gene Nomenclature Committee identifier PRNP
NM_017414	
	Displays the region of genome with RefSeq identifier NM_017414
NP_059110	
	Displays the region of genome with protein accession number NP_059110


pseudogene mRNA		Lists transcribed pseudogenes, but not cDNAs
homeobox caudal		Lists mRNAs for caudal homeobox genes
zinc finger		Lists many zinc finger mRNAs
kruppel zinc finger		Lists only kruppel-like zinc fingers
huntington		Lists candidate genes associated with Huntington's disease
zahler		Lists mRNAs deposited by scientist named Zahler
Evans,J.E.		Lists mRNAs deposited by co-author J.E. Evans

74 uses - Created 2007-08-14 19:36:52 - Last used 2025-05-26 15:37:19

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